Package index • micro4R

All functions

dada2_asvtable(): dada2 workflow to generate ASV table

dada2_taxa(): dada2 taxa

dada2_wrapper(): dada2 wrapper

decontam_wrapper(): Decontam

exampleData: List of all three example objects in one package

example_metadata(): Load in example metadata file

findUserCD(): Collection of helper/utility functions not intended to be directly used by end user

full_example_data(): Option to use googledrive package to download example data

known_dada2_dbs(): A simple tibble of the names of maintained dada2-formatted taxonomy reference databases

makeExample(): Create example data for testing and teaching purposes specifically for this package.

makeExampleMeta(): Create a simple metadata table

makeExampleSeqtab(): Creates a simple example ASV table

makeExampleTaxa(): Create a simple taxonomy table

matrixify(): Turn a data frame or tibble into a matrix

ref_db(): Set a reference database for taxonomy assignment

tibblefy(): tibblefy a specific type of data frame

whereFastqs(): Title