Title

Title

Usage

whereFastqs(path = NULL, chatty = TRUE)

Arguments

path

Path to folder containing fastq files

chatty

If set to FALSE, don't print as much to console.

Value

file path to a folder

Examples

whereFastqs(".")
#> # A tibble: 18 × 1
#>    value                 
#>    <chr>                 
#>  1 dada2_asvtable.html   
#>  2 dada2_taxa.html       
#>  3 dada2_wrapper.html    
#>  4 decontam_wrapper.html 
#>  5 exampleData.html      
#>  6 example_metadata.html 
#>  7 findUserCD.html       
#>  8 full_example_data.html
#>  9 index.html            
#> 10 known_dada2_dbs.html  
#> 11 makeExample.html      
#> 12 makeExampleMeta.html  
#> 13 makeExampleSeqtab.html
#> 14 makeExampleTaxa.html  
#> 15 matrixify.html        
#> 16 pipe.html             
#> 17 ref_db.html           
#> 18 tibblefy.html         
#> [1] "The total number of potential FASTQ files detected in the directory was 0, and the number of potential forward reads and reverse reads was 0. Please note that this is only performing simple pattern matching to look for standard Illumina-named files, and is only provided as a simple sanity check for you!"
#> [1] "."